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Singularity container for CITE-seq data analysis

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posted on 23.02.2020 by Yuri Kotliarov, Dylan Hirsch, John Tsang
This Singularity container is provided to reproduce the results and analyses described in the associated paper (Kotliarov Y, Sparks R et. al. Nature Medicine, 2020).

Singularity container usage guide can be found at: https://sylabs.io/docs/

Briefly, to use the container you need to run this command:

singularity shell -B full_path_to_working_directory/:/var/workflow1 container_file.img

where full_path_to_working_directory is the directory where the data and R code files are located.

This item is a part of the collection: https://doi.org/10.35092/yhjc.c.4753772

Funding

Funded by the Intramural Research Program of the National Institute of Allergy and Infectious Diseases (NIAID) and NIH Institutes supporting the Center for Human Immunology (CHI), National Institutes of Health, Bethesda, MD, USA

1ZIAAI001152 (NIAID)

1ZICAI001226 (NIH CHI)

History

Select an IC:

  • AI - National Institute of Allergy and Infectious Diseases (NIAID)

Is this associated with a publication?

Yes

DOI(s) of associated publication(s):

I confirm there is no human identifiable information in this dataset.

Yes

Licence

Exports