Singularity container for CITE-seq data analysis
software
posted on 2020-02-23, 05:19 authored by Yuri KotliarovYuri Kotliarov, Dylan Hirsch, John TsangJohn TsangThis Singularity container is provided to reproduce the results and analyses described in the associated paper (Kotliarov Y, Sparks R et. al. Nature Medicine, 2020).
Singularity container usage guide can be found at: https://sylabs.io/docs/
Briefly, to use the container you need to run this command:
singularity shell -B full_path_to_working_directory/:/var/workflow1 container_file.img
where full_path_to_working_directory is the directory where the data and R code files are located.
Singularity container usage guide can be found at: https://sylabs.io/docs/
Briefly, to use the container you need to run this command:
singularity shell -B full_path_to_working_directory/:/var/workflow1 container_file.img
where full_path_to_working_directory is the directory where the data and R code files are located.
This item is a part of the collection: https://doi.org/10.35092/yhjc.c.4753772
Funding
Funded by the Intramural Research Program of the National Institute of Allergy and Infectious Diseases (NIAID) and NIH Institutes supporting the Center for Human Immunology (CHI), National Institutes of Health, Bethesda, MD, USA
1ZIAAI001152 (NIAID)
1ZICAI001226 (NIH CHI)
History
Select an IC:
- AI - National Institute of Allergy and Infectious Diseases (NIAID)
Is this associated with a publication?
- Yes
DOI(s) of associated publication(s):
I confirm there is no human identifiable information in this dataset.
- Yes